Scaffolding dockerin binding protein A
Details
- Name
- Scaffolding dockerin binding protein A
- Synonyms
- Not Available
- Gene Name
- sdbA
- Organism
- Clostridium thermocellum
- Amino acid sequence
>lcl|BSEQ0011923|Scaffolding dockerin binding protein A MRKKKRLISLLLAVFIAVACLPAGIARADKASSIELKFDRNKGEVGDILIGTVRINNIKN FAGFQVNIVYDPKVLMAVDPETGKEFTSSTFPPGRTVLKNNAYGPIQIADNDPEKGILNF ALAYSYIAGYKETGVAEESGIIAKIGFKILQKKSTAVKFQDTLSMPGAISGTQLFDWDGE VITGYEVIQPDVLSLGDEPYETPGTDIPISDNPAATPSSTPSVTPSPEVKPTQTPSPAEN SAKVELEPVLDNATGEAKAAIDEEKLNKALDEAKKSEDDKLVELNIKKVENADAYIQQLP AKFLIKSDAEYKLRIATEQGIIEVPANMLNTADISKLVKNDSVVEFVIRKVKVDELGAEL KEKIGNRPVIDISVVVDGKKVEWSNYKAKVKISIPYKPDAKELENHEHIVVLHIDDAGKA VSVPSGKYEPSLGVVTFETNHLSKYAVSYVYKTFADIGSYAWAKKQIEVLASKGVINGTS DTTFTPQADITRADFMILLVKALGLTAEVTSNFDDVSEKDYYYEYVGIAKELGITTGVGN NKFNPKAKITRQDMMVLTTNALRIAGKISSTGTRADVERFSDKDQIASYAVEGVATLVKE GIVVGSGDIINPRGNASRAELAAIIYKIYYK
- Number of residues
- 631
- Molecular Weight
- 68618.73
- Theoretical pI
- 5.21
- GO Classification
- Functionscarbohydrate bindingProcessespolysaccharide catabolic process
- General Function
- Carbohydrate binding
- Specific Function
- Not Available
- Pfam Domain Function
- Transmembrane Regions
- Not Available
- Cellular Location
- Not Available
- Gene sequence
>lcl|BSEQ0005346|1896 bp ATGAGGAAGAAAAAAAGATTAATATCATTACTGCTTGCGGTTTTTATCGCCGTTGCATGT CTGCCGGCGGGAATTGCAAGGGCAGATAAAGCCTCGAGCATTGAGCTTAAGTTTGACCGC AATAAGGGAGAAGTTGGAGATATACTTATTGGTACCGTAAGGATAAACAATATCAAGAAT TTCGCAGGATTTCAGGTAAACATTGTATATGATCCAAAAGTCTTAATGGCTGTTGACCCT GAAACGGGGAAAGAATTTACTTCTTCAACATTTCCGCCAGGACGCACTGTACTGAAAAAC AATGCTTACGGCCCAATACAGATTGCGGACAATGATCCGGAAAAAGGGATACTGAACTTC GCGCTTGCATATTCATATATTGCGGGATACAAAGAAACAGGAGTAGCGGAGGAAAGCGGC ATAATTGCGAAAATTGGATTTAAAATACTCCAGAAAAAGAGCACTGCCGTAAAATTCCAG GATACATTAAGCATGCCCGGAGCTATTTCGGGAACACAGCTGTTTGACTGGGACGGAGAA GTTATTACCGGATATGAGGTAATACAGCCGGATGTGCTGAGTTTGGGTGACGAGCCTTAT GAGACACCGGGAACGGATATTCCGATATCCGACAATCCGGCAGCAACTCCGTCATCCACG CCGTCAGTTACTCCTTCACCGGAAGTTAAACCGACTCAGACGCCTTCGCCTGCAGAAAAT TCTGCAAAAGTGGAGCTTGAACCTGTGTTGGATAATGCAACAGGAGAAGCAAAGGCGGCA ATAGATGAAGAAAAATTAAACAAGGCTCTTGATGAAGCGAAAAAATCGGAAGATGACAAA CTTGTGGAACTTAACATAAAGAAGGTTGAAAATGCCGATGCTTACATACAACAGCTTCCG GCGAAATTCCTGATAAAAAGTGACGCCGAATATAAGCTGAGAATAGCTACAGAGCAGGGA ATTATAGAAGTACCGGCCAACATGCTGAATACTGCGGATATTTCAAAGCTTGTAAAAAAT GACTCCGTTGTTGAATTCGTCATAAGAAAAGTAAAAGTCGATGAACTTGGTGCAGAGCTC AAAGAGAAGATAGGCAACAGGCCGGTGATTGACATAAGCGTGGTTGTTGACGGCAAAAAA GTTGAATGGAGCAATTACAAAGCCAAGGTTAAAATATCAATTCCTTACAAGCCTGATGCA AAAGAGCTGGAGAACCACGAGCATATTGTTGTACTCCATATTGATGACGCCGGCAAGGCA GTTTCCGTACCCAGCGGAAAATATGAACCTTCTTTGGGCGTCGTTACGTTTGAGACGAAT CATTTAAGCAAGTATGCGGTTTCATATGTTTACAAGACTTTCGCGGATATTGGTTCATAT GCCTGGGCTAAAAAGCAGATAGAGGTTTTGGCTTCCAAAGGAGTAATTAACGGTACATCC GATACCACTTTTACGCCCCAGGCAGACATAACAAGGGCGGATTTCATGATACTTCTTGTA AAGGCACTGGGATTGACTGCCGAGGTTACTTCCAATTTTGATGATGTGTCCGAAAAAGAC TACTATTATGAATACGTGGGAATTGCAAAAGAGCTTGGAATTACGACAGGAGTCGGAAAC AACAAGTTCAATCCGAAAGCCAAAATTACAAGACAGGATATGATGGTACTTACAACAAAT GCTCTCAGGATTGCAGGAAAAATATCGAGCACAGGAACCCGCGCTGATGTTGAAAGATTT TCGGACAAGGACCAGATAGCTTCATATGCGGTTGAAGGCGTTGCAACCTTGGTAAAAGAA GGTATTGTAGTGGGAAGCGGCGATATTATAAATCCAAGGGGAAATGCTTCAAGAGCCGAA CTTGCAGCAATCATATACAAGATTTACTACAAGTAA
- Chromosome Location
- Not Available
- Locus
- Not Available
- External Identifiers
Resource Link UniProtKB ID P71143 UniProtKB Entry Name P71143_CLOTM GenBank Gene ID U49980 - General References
- Leibovitz E, Beguin P: A new type of cohesin domain that specifically binds the dockerin domain of the Clostridium thermocellum cellulosome-integrating protein CipA. J Bacteriol. 1996 Jun;178(11):3077-84. [Article]
- Carvalho AL, Pires VM, Gloster TM, Turkenburg JP, Prates JA, Ferreira LM, Romao MJ, Davies GJ, Fontes CM, Gilbert HJ: Insights into the structural determinants of cohesin-dockerin specificity revealed by the crystal structure of the type II cohesin from Clostridium thermocellum SdbA. J Mol Biol. 2005 Jun 24;349(5):909-15. [Article]
- Currie MA, Adams JJ, Faucher F, Bayer EA, Jia Z, Smith SP: Scaffoldin conformation and dynamics revealed by a ternary complex from the Clostridium thermocellum cellulosome. J Biol Chem. 2012 Aug 3;287(32):26953-61. doi: 10.1074/jbc.M112.343897. Epub 2012 Jun 15. [Article]
Drug Relations
- Drug Relations
DrugBank ID Name Drug group Pharmacological action? Actions Details