Metabolite 5-carboxy-2'-deoxyuridine

Name
5-carboxy-2'-deoxyuridine
Description
Not Available
Structure
Synonyms
Not Available
UNII
Not Available
CAS number
Not Available
Weight
Average: 272.2115
Monoisotopic: 272.064450748
Chemical Formula
C10H12N2O7
InChI Key
GAGYTXTVUMXAOC-XVMARJQXSA-N
InChI
InChI=1S/C10H12N2O7/c13-3-6-5(14)1-7(19-6)12-2-4(9(16)17)8(15)11-10(12)18/h2,5-7,13-14H,1,3H2,(H,16,17)(H,11,15,18)/t5-,6+,7-/m0/s1
IUPAC Name
4-hydroxy-1-[(2S,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid
SMILES
OC[C@H]1O[C@@H](C[C@@H]1O)N1C=C(C(O)=O)C(O)=NC1=O
Reactions
Spectra
SpectrumSpectrum TypeSplash Key
Predicted GC-MS Spectrum - GC-MSPredicted GC-MSsplash10-0006-9150000000-2946360e0e25245c068c
Predicted MS/MS Spectrum - 10V, Positive (Annotated)Predicted LC-MS/MSsplash10-052r-0950000000-a94d6df0f6968b7bc794
Predicted MS/MS Spectrum - 10V, Negative (Annotated)Predicted LC-MS/MSsplash10-00ei-0890000000-4e6834beeb7e5dc07b64
Predicted MS/MS Spectrum - 20V, Negative (Annotated)Predicted LC-MS/MSsplash10-08fr-0920000000-6cf935780f7d979a8628
Predicted MS/MS Spectrum - 20V, Positive (Annotated)Predicted LC-MS/MSsplash10-000i-0900000000-ac42e2d8f73895f612ae
Predicted MS/MS Spectrum - 40V, Positive (Annotated)Predicted LC-MS/MSsplash10-01p9-0920000000-665e1faf20650d614de3
Predicted MS/MS Spectrum - 40V, Negative (Annotated)Predicted LC-MS/MSsplash10-03dv-1910000000-810c0e7e0f2b5db4543e
Chromatographic Properties
Collision Cross Sections (CCS)
AdductCCS Value (Å2)Source typeSource
[M-H]-167.8016014
predicted
DarkChem Lite v0.1.0
[M-H]-158.12325
predicted
DeepCCS 1.0 (2019)
[M+H]+169.3012014
predicted
DarkChem Lite v0.1.0
[M+H]+160.4814
predicted
DeepCCS 1.0 (2019)
[M+Na]+168.5088014
predicted
DarkChem Lite v0.1.0
[M+Na]+167.07199
predicted
DeepCCS 1.0 (2019)
Human Metabolome Database
HMDB0060774
ChemSpider
164246
ChEBI
194396
Predicted Properties
PropertyValueSource
Water Solubility9.54 mg/mLALOGPS
logP-1.7ALOGPS
logP-1.6Chemaxon
logS-1.5ALOGPS
pKa (Strongest Acidic)2.75Chemaxon
pKa (Strongest Basic)-3Chemaxon
Physiological Charge-1Chemaxon
Hydrogen Acceptor Count8Chemaxon
Hydrogen Donor Count4Chemaxon
Polar Surface Area139.89 Å2Chemaxon
Rotatable Bond Count3Chemaxon
Refractivity57.45 m3·mol-1Chemaxon
Polarizability24.11 Å3Chemaxon
Number of Rings2Chemaxon
Bioavailability1Chemaxon
Rule of FiveYesChemaxon
Ghose FilterNoChemaxon
Veber's RuleNoChemaxon
MDDR-like RuleNoChemaxon