3D structure for Open Form of 2'-Deoxy-Ribofuranose-5'-Phosphate (DB04087)

5288577
  -OEChem-10051720283D

26 25  0     1  0  0  0  0  0999 V2000
    2.9843    0.3928    0.3441 P   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4105    1.0470   -1.2912 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5651   -2.0595    0.4897 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4506   -0.1150    0.3614 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0961    0.4276    0.6633 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0548    1.3625   -0.9481 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7896   -0.9250   -0.1355 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4687    0.9992    1.6285 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4220    0.1038   -0.2204 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5316   -1.1010   -0.5694 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8718   -0.3087    0.0833 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9210   -0.7020   -0.8229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7719    0.8785    0.4172 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0356    0.6086    0.6740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9145   -1.5901   -1.4726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9066   -1.0273    0.9108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2984   -0.8247   -0.7868 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5055   -1.5992   -1.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0057   -0.0057   -1.6617 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8060    1.5923   -0.4116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4096    1.3948    1.3121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5464    1.4917   -1.2849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2081   -1.6301    1.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6303    1.2121    0.8752 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8876    1.8466   -1.1333 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7703   -0.9062   -0.1405 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  4  1  0  0  0  0
  1  6  1  0  0  0  0
  1  7  1  0  0  0  0
  1  8  2  0  0  0  0
  2  9  1  0  0  0  0
  2 22  1  0  0  0  0
  3 10  1  0  0  0  0
  3 23  1  0  0  0  0
  4 12  1  0  0  0  0
  5 13  1  0  0  0  0
  5 24  1  0  0  0  0
  6 25  1  0  0  0  0
  7 26  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
  9 14  1  0  0  0  0
 10 12  1  0  0  0  0
 10 15  1  0  0  0  0
 11 13  1  0  0  0  0
 11 16  1  0  0  0  0
 11 17  1  0  0  0  0
 12 18  1  0  0  0  0
 12 19  1  0  0  0  0
 13 20  1  0  0  0  0
 13 21  1  0  0  0  0
M  END
> <DATABASE_ID>
DB04087

> <DATABASE_NAME>
drugbank

> <ORIGINAL_SOURCE>
PUBCHEM

> <ORIGINAL_SOURCE_URL>
https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/inchikey/YCHBTVQJICBXEI-CRCLSJGQSA-N/SDF?record_type=3d

> <SMILES>
[H][C@](O)(CCO)[C@]([H])(O)COP(O)(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C5H13O7P/c6-2-1-4(7)5(8)3-12-13(9,10)11/h4-8H,1-3H2,(H2,9,10,11)/t4-,5+/m0/s1

> <INCHI_KEY>
YCHBTVQJICBXEI-CRCLSJGQSA-N

> <FORMULA>
C5H13O7P

> <MOLECULAR_WEIGHT>
216.1263

> <EXACT_MASS>
216.039889282

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
26

> <JCHEM_AVERAGE_NEUTRAL_MICROSPECIES_CHARGE>
-1.856630565169352

> <JCHEM_AVERAGE_POLARIZABILITY>
18.080574329026515

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S)-2,3,5-trihydroxypentyl]oxy}phosphonic acid

> <ALOGPS_LOGP>
-1.87

> <JCHEM_LOGP>
-2.532955257

> <ALOGPS_LOGS>
-0.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NEUTRAL_CHARGE>
-2

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.524683387389331

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.498874453939342

> <JCHEM_PKA_STRONGEST_BASIC>
-2.4113242948895506

> <JCHEM_POLAR_SURFACE_AREA>
127.45

> <JCHEM_REFRACTIVITY>
42.216899999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.30e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
biotin

> <JCHEM_VEBER_RULE>
0

$$$$

Similar Structures

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

3D structure for Open Form of 2'-Deoxy-Ribofuranose-5'-Phosphate (DB04087)

Structure for Open Form of 2'-Deoxy-Ribofuranose-5'-Phosphate (DB04087)