Outer membrane porin, OprD family

Details

Name
Outer membrane porin, OprD family
Synonyms
Not Available
Gene Name
Not Available
Organism
Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
Amino acid sequence
>lcl|BSEQ0012912|Outer membrane porin, OprD family
MKPSTPPSYLLPSLLALALSSTALPALAAESGFLEDAQANLTLRNFYFNRNFTNPTKAQG
KAEEWTQSFILDAKSGFTQGTVGFGMDVLGLYSLKLDGGKGTGGTQLLPLDHDGRPADNF
GRLGVAFKARLSQTEVKVGEWMPVLPILRSDDGRSLPQTFRGGQITSKEIAGLTLYGGQF
RANSPRDDSSMSDMSMFGKAAFTSDRFNFQGAEYAFNDKRTQIALWNAQLKDIYSQQFIN
LIHSQPLGDWTLGANLGFFYGKEDGSARAGDMENRTWSGLFSAKYGGNTFYVGLQKLTGD
SAWMRVNGTSGGTLANDSYNASYDNAKEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVH
TATVSDGKEWGRESEVAYTVQSGTLKNLNLKWRNSTMRRDFSNNEFDENRLIISYPLSLL
Number of residues
420
Molecular Weight
46225.315
Theoretical pI
8.57
GO Classification
Functions
porin activity
Components
integral component of membrane
General Function
Porin activity
Specific Function
Not Available
Pfam Domain Function
Transmembrane Regions
Not Available
Cellular Location
Not Available
Gene sequence
>lcl|BSEQ0012913|Outer membrane porin, OprD family
ATGAAGCCAAGCACCCCGCCGTCCTACCTTCTGCCCAGCCTCCTGGCCCTGGCGCTGAGC
AGCACCGCCCTGCCGGCACTGGCCGCAGAGTCGGGCTTTCTCGAAGATGCCCAGGCCAAC
CTGACCCTGCGCAACTTCTATTTCAACCGCAACTTCACCAACCCGACCAAGGCCCAGGGC
AAGGCCGAGGAATGGACCCAGAGCTTCATCCTCGATGCAAAGTCCGGCTTCACCCAGGGC
ACCGTCGGTTTCGGCATGGACGTGCTGGGCCTCTACTCGCTGAAACTCGACGGCGGCAAG
GGCACTGGCGGCACCCAACTGCTGCCCCTGGATCACGACGGCCGCCCGGCGGACAACTTC
GGACGCCTGGGAGTAGCTTTCAAGGCGCGACTGTCTCAGACCGAGGTCAAGGTCGGCGAA
TGGATGCCAGTGCTGCCGATCCTGCGCTCCGACGACGGCCGCTCGCTGCCACAGACCTTT
CGCGGCGGCCAGATCACCTCGAAGGAAATTGCCGGCCTGACCCTCTATGGCGGCCAGTTC
CGCGCCAACAGCCCGCGTGACGACAGCAGCATGAGTGACATGAGCATGTTCGGCAAAGCG
GCCTTCACCTCCGACCGTTTCAACTTCCAGGGCGCCGAATATGCCTTCAACGACAAGCGC
ACCCAGATCGCCCTGTGGAATGCCCAGCTCAAGGACATCTACAGCCAGCAGTTCATCAAC
CTGATCCACAGCCAACCCCTGGGCGACTGGACCCTGGGCGCCAACCTGGGCTTCTTCTAT
GGCAAGGAAGACGGCAGCGCCCGCGCCGGCGACATGGAGAACCGCACCTGGTCCGGCCTG
TTCTCGGCCAAATATGGCGGCAACACCTTCTATGTGGGCCTGCAGAAGCTCACTGGCGAC
AGCGCCTGGATGCGGGTCAATGGCACCAGCGGCGGCACCCTGGCCAACGACAGCTACAAC
GCCAGCTACGACAACGCCAAGGAGAAGTCCTGGCAGGTGCGCCATGACTACAATTTCGCC
GCGCTGGGCGTTCCCGGCCTGACCCTGATGAACCGCTACATCAGCGGCAGCAACGTGCAC
ACCGCCACCGTCAGCGACGGCAAGGAATGGGGCCGGGAAAGCGAAGTGGCCTACACGGTC
CAGAGCGGCACACTGAAGAACCTCAACCTGAAGTGGCGCAACTCCACCATGCGCCGGGAC
TTCAGCAACAACGAGTTCGACGAGAACCGCCTGATCATCAGCTATCCCCTCAGCCTGCTG
TAA
Chromosome Location
Not Available
Locus
Not Available
External Identifiers
ResourceLink
UniProtKB IDQ4KH25
UniProtKB Entry NameQ4KH25_PSEF5
GenBank Protein ID68347813
GenBank Gene IDCP000076
General References
  1. Paulsen IT, Press CM, Ravel J, Kobayashi DY, Myers GS, Mavrodi DV, DeBoy RT, Seshadri R, Ren Q, Madupu R, Dodson RJ, Durkin AS, Brinkac LM, Daugherty SC, Sullivan SA, Rosovitz MJ, Gwinn ML, Zhou L, Schneider DJ, Cartinhour SW, Nelson WC, Weidman J, Watkins K, Tran K, Khouri H, Pierson EA, Pierson LS 3rd, Thomashow LS, Loper JE: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nat Biotechnol. 2005 Jul;23(7):873-8. Epub 2005 Jun 26. [Article]
  2. Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, Chance MR, Baker D, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Sali A, Sauder JM, Burley SK: Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution. Proteins. 2010 Nov 1;78(14):3056-62. doi: 10.1002/prot.22829. [Article]

Drug Relations

Drug Relations
DrugBank IDNameDrug groupPharmacological action?ActionsDetails
DB04147Dodecyldimethylamine N-oxideexperimentalunknownDetails